If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 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'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ), 'gf_id' => 'HOM05D000555', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000555' ), 'data_identifier' => 'HOM05D000555', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000555', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '991', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p06370' => 'bna', 'A02p21430' => 'bna', 'A02p31510' => 'bna', 'A03p04800' => 'bna', 'A03p61100' => 'bna', 'A05p16710' => 'bna', 'A06p11960' => 'bna', 'A06p44850' => 'bna', 'A07p26860' => 'bna', 'A07p44870' => 'bna', 'A08p18400' => 'bna', 'A08p31450' => 'bna', 'Aa31LG2G18210' => 'aar', 'Aa31LG3G16180' => 'aar', 'Aa31LG4G1070' => 'aar', 'Aa31LG4G7710' => 'aar', 'Aa31LG7G520' => 'aar', 'Aa31sc219G80' => 'aar', 'Aa31sc233G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2222' => 'aag', 'Actinidia01447' => 'ach', 'Actinidia01448' => 'ach', 'Actinidia02283' => 'ach', 'Actinidia02284' => 'ach', 'Actinidia13191' => 'ach', 'Actinidia16085' => 'ach', 'Actinidia18244' => 'ach', 'Actinidia21314' => 'ach', 'Actinidia21315' => 'ach', 'Actinidia21319' => 'ach', 'Actinidia21320' => 'ach', 'Actinidia22299' => 'ach', 'Actinidia23075' => 'ach', 'Actinidia23076' => 'ach', 'Actinidia23100' => 'ach', 'Actinidia23101' => 'ach', 'Actinidia28388' => 'ach', 'Actinidia37167' => 'ach', 'Actinidia37169' => 'ach', 'Actinidia38709' => 'ach', 'Ah.01g006890' => 'amhyb', 'Ah.05g171140' => 'amhyb', 'Ah.09g233870' => 'amhyb', 'Ah.10g035500' => 'amhyb', 'Ah.16g104990' => 'amhyb', 'AL142U10010' => 'aly', 'AL1G28100' => 'aly', 'AL2G37810' => 'aly', 'AL2G40580' => 'aly', 'AL6G21540' => 'aly', 'AL7G18570' => 'aly', 'AL7G20060' => 'aly', 'AL7G20420' => 'aly', 'AL8G10260' => 'aly', 'Aqoxy1G02801' => 'aox', 'Aqoxy2G02177' => 'aox', 'Aqoxy2G02178' => 'aox', 'Aqoxy2G02186' => 'aox', 'Aqoxy6G00208' => 'aox', 'Aqoxy7G03446' => 'aox', 'Aqoxy7G03625' => 'aox', 'arahy.Tifrunner.gnm1.ann1.028SBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1A3YDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVE6NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BN4BGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX9WGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRB127' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3ML28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIL7XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JQ5BKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0H003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L28ZAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M87LIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7HAGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC876R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QZG3GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMWQ71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC583Y' => 'arhy', 'AT1G15940' => 'ath', 'AT1G77600' => 'ath', 'AT1G80810' => 'ath', 'AT4G31880' => 'ath', 'AT5G10950' => 'ath', 'AT5G47690' => 'ath', 'ATR0584G256' => 'atr', 'ATR0739G166' => 'atr', 'ATR0751G127' => 'atr', 'Atru.chr1.2254' => 'acertr', 'Atru.chr10.2406' => 'acertr', 'Atru.chr10.2407' => 'acertr', 'Atru.chr13.1457' => 'acertr', 'Atru.chr13.1458' => 'acertr', 'Atru.chr13.1479' => 'acertr', 'Atru.chr13.1480' => 'acertr', 'Atru.chr13.1481' => 'acertr', 'Atru.chr7.2535' => 'acertr', 'AUR62012473' => 'cqu', 'AUR62012854' => 'cqu', 'AUR62014342' => 'cqu', 'AUR62016662' => 'cqu', 'AUR62019084' => 'cqu', 'AUR62021811' => 'cqu', 'AUR62026992' => 'cqu', 'AUR62030832' => 'cqu', 'AUR62031599' => 'cqu', 'BcaB01g05495' => 'bca', 'BcaB01g06314' => 'bca', 'BcaB02g06641' => 'bca', 'BcaB02g06642' => 'bca', 'BcaB02g06645' => 'bca', 'BcaB02g07247' => 'bca', 'BcaB03g13051' => 'bca', 'BcaB04g16945' => 'bca', 'BcaB05g25062' => 'bca', 'BcaC01g01046' => 'bca', 'BcaC01g01347' => 'bca', 'BcaC01g01606' => 'bca', 'BcaC01g01607' => 'bca', 'BcaC03g15748' => 'bca', 'BcaC03g16985' => 'bca', 'BcaC05g25613' => 'bca', 'BcaC06g31349' => 'bca', 'BcaC06g34231' => 'bca', 'BcaC07g38799' => 'bca', 'BcaC07g41463' => 'bca', 'BcaC08g44276' => 'bca', 'BcaC08g45340' => 'bca', 'BcaC08g47543' => 'bca', 'BcaC09g51979' => 'bca', 'BcaNung03120' => 'bca', 'BolC1t00697H' => 'bol', 'BolC2t09500H' => 'bol', 'BolC2t10981H' => 'bol', 'BolC3t13062H' => 'bol', 'BolC3t19676H' => 'bol', 'BolC5t30147H' => 'bol', 'BolC6t36895H' => 'bol', 'BolC6t37613H' => 'bol', 'BolC6t38118H' => 'bol', 'BolC6t40385H' => 'bol', 'BolC7t43676H' => 'bol', 'BolC7t46344H' => 'bol', 'BolC8t49361H' => 'bol', 'BolC8t52014H' => 'bol', 'BraA01t00602Z' => 'bra', 'BraA02t07153Z' => 'bra', 'BraA02t08154Z' => 'bra', 'BraA03t09820Z' => 'bra', 'BraA03t15149Z' => 'bra', 'BraA05t20575Z' => 'bra', 'BraA06t24367Z' => 'bra', 'BraA06t27357Z' => 'bra', 'BraA07t30330Z' => 'bra', 'BraA07t31994Z' => 'bra', 'BraA08t33801Z' => 'bra', 'BraA08t35067Z' => 'bra', 'BraA09t41482Z' => 'bra', 'C01p07030' => 'bna', 'C02p34810' => 'bna', 'C02p48870' => 'bna', 'C03p05540' => 'bna', 'C03p73960' => 'bna', 'C03p73980' => 'bna', 'C03p73990' => 'bna', 'C03p74130' => 'bna', 'C05p14160' => 'bna', 'C06p16960' => 'bna', 'C06p29510' => 'bna', 'C06p53680' => 'bna', 'C07p31350' => 'bna', 'C07p58970' => 'bna', 'C08p17350' => 'bna', 'C08p44680' => 'bna', 'CAN.G1156.22' => 'can', 'CAN.G1396.9' => 'can', 'CAN.G1490.5' => 'can', 'CAN.G1490.6' => 'can', 'CAN.G1695.2' => 'can', 'CAN.G1845.1' => 'can', 'CAN.G199.62' => 'can', 'CAN.G407.58' => 'can', 'CAN.G407.59' => 'can', 'CAN.G407.60' => 'can', 'CANSAT11G2383' => 'cansat', 'CANSAT11G2461' => 'cansat', 'CANSAT35G2000' => 'cansat', 'CANSAT56G1713' => 'cansat', 'CANSAT56G4270' => 'cansat', 'CANSAT78G2244' => 'cansat', 'CARHR016450' => 'chi', 'CARHR071110' => 'chi', 'CARHR073660' => 'chi', 'CARHR073670' => 'chi', 'CARHR173620' => 'chi', 'CARHR202340' => 'chi', 'CARHR239810' => 'chi', 'Carub.0001s1574' => 'cru', 'Carub.0002s2449' => 'cru', 'Carub.0002s2674' => 'cru', 'Carub.0006s0944' => 'cru', 'Carub.0007s0866' => 'cru', 'Carub.0008s0009' => 'cru', 'Ca_00764_v3' => 'car', 'Ca_13057_v3' => 'car', 'Ca_14563_v3' => 'car', 'Ca_14564_v3' => 'car', 'Ca_15773_v3' => 'car', 'Ca_20991_v3' => 'car', 'Ca_30455_v3' => 'car', 'CBR_g19098' => 'cbr', 'Cc00_g00440' => 'ccan', 'Cc00_g18670' => 'ccan', 'Cc08_g00030' => 'ccan', 'Cc09_g00310' => 'ccan', 'Cc09_g06560' => 'ccan', 'Cc09_g06580' => 'ccan', 'Cc09_g06590' => 'ccan', 'Cc09_g06600' => 'ccan', 'Cc10_g11730' => 'ccan', 'CDE02G2254' => 'cde', 'CDE05G0042' => 'cde', 'CDE05G2238' => 'cde', 'CDE05G2436' => 'cde', 'CDE06G0174' => 'cde', 'CDE06G0752' => 'cde', 'Cfa013070' => 'cfa', 'Cfa016012' => 'cfa', 'Ciclev10003021m.g' => 'ccl', 'Ciclev10003517m.g' => 'ccl', 'Ciclev10007391m.g' => 'ccl', 'Ciclev10014035m.g' => 'ccl', 'Ciclev10024823m.g' => 'ccl', 'CiPaw.01G254100' => 'cil', 'CiPaw.02G161700' => 'cil', 'CiPaw.02G161900' => 'cil', 'CiPaw.05G222400' => 'cil', 'CiPaw.07G229100' => 'cil', 'CiPaw.08G006700' => 'cil', 'CiPaw.09G108900' => 'cil', 'CiPaw.10G082000' => 'cil', 'ClCG01G011160' => 'cla', 'ClCG08G013680' => 'cla', 'ClCG09G003300' => 'cla', 'COL.COLO4_03454' => 'col', 'COL.COLO4_14074' => 'col', 'COL.COLO4_26681' => 'col', 'COL.COLO4_31941' => 'col', 'COL.COLO4_31942' => 'col', 'COL.COLO4_35931' => 'col', 'Cpa.g.sc10.87' => 'cpa', 'Cpa.g.sc127.21' => 'cpa', 'Cpa.g.sc169.42' => 'cpa', 'Cpa.g.sc27.226' => 'cpa', 'Cpa.g.sc36.61' => 'cpa', 'Cpa.g.sc36.62' => 'cpa', 'Cpa.g.sc462.4' => 'cpa', 'Cpa.g.sc462.5' => 'cpa', 'Cpa.g.sc50.140' => 'cpa', 'Cre01.g032550' => 'cre', 'Cre02.g099601' => 'cre', 'CsaV3_1G014540' => 'csa', 'CsaV3_1G015470' => 'csa', 'CsaV3_2G032450' => 'csa', 'CsaV3_4G028210' => 'csa', 'CsaV3_7G031920' => 'csa', 'CsaV3_UNG076600' => 'csa', 'CSS0001545' => 'camsi', 'CSS0009323' => 'camsi', 'CSS0011512' => 'camsi', 'CSS0012615' => 'camsi', 'CSS0015850' => 'camsi', 'CSS0020180' => 'camsi', 'CSS0028716' => 'camsi', 'CSS0031647' => 'camsi', 'CSS0042939' => 'camsi', 'CSS0047814' => 'camsi', 'CSS0049795' => 'camsi', 'DCAR_002243' => 'dca', 'DCAR_003110' => 'dca', 'DCAR_003549' => 'dca', 'DCAR_006266' => 'dca', 'DCAR_016300' => 'dca', 'DCAR_021367' => 'dca', 'DCAR_022853' => 'dca', 'DCAR_025568' => 'dca', 'DCAR_025574' => 'dca', 'DCAR_026586' => 'dca', 'DCAR_026687' => 'dca', 'DCAR_030833' => 'dca', 'DCAR_030913' => 'dca', 'Dinv04395' => 'din', 'Dinv07225' => 'din', 'Dinv15337' => 'din', 'Dinv21407' => 'din', 'Dinv27321' => 'din', 'Dinv34973' => 'din', 'Dinv40984' => 'din', 'Duzib093G1130' => 'dzi', 'Duzib116G0370' => 'dzi', 'Duzib150G0742' => 'dzi', 'Duzib168G1068' => 'dzi', 'Duzib187G0516' => 'dzi', 'Duzib192G0010' => 'dzi', 'Duzib192G0111' => 'dzi', 'Duzib235G0542' => 'dzi', 'ECA232G2241' => 'eca', 'ECA232G2920' => 'eca', 'ECA234G0651' => 'eca', 'ECA236G0425' => 'eca', 'ECA240G0733' => 'eca', 'ECA240G1398' => 'eca', 'ECA240G2353' => 'eca', 'ECA240G3492' => 'eca', 'ECA240G3640' => 'eca', 'ECA240G4825' => 'eca', 'ECA246G2105' => 'eca', 'ECA247G2469' => 'eca', 'ECA247G2489' => 'eca', 'ECA247G3063' => 'eca', 'ECA247G3444' => 'eca', 'ECA248G1369' => 'eca', 'EL10Ac1g01004' => 'bvu', 'EL10Ac2g04122' => 'bvu', 'EL10Ac8g20267' => 'bvu', 'EL10Ac9g22213' => 'bvu', 'Eucgr.B01590' => 'egr', 'Eucgr.C01945' => 'egr', 'Eucgr.C02662' => 'egr', 'Eucgr.E03853' => 'egr', 'Eucgr.F03787' => 'egr', 'Eucgr.J03105' => 'egr', 'Eucgr.J03106' => 'egr', 'Eucgr.J03108' => 'egr', 'Eucgr.J03109' => 'egr', 'Eucgr.J03111' => 'egr', 'Eucgr.J03112' => 'egr', 'Eucgr.L02814' => 'egr', 'FAN02G1211' => 'fan', 'FAN04G0850' => 'fan', 'FAN05G2625' => 'fan', 'FAN09G3803' => 'fan', 'FAN14G0157' => 'fan', 'FAN15G0597' => 'fan', 'FAN15G2287' => 'fan', 'FAN15G2747' => 'fan', 'FAN19G3107' => 'fan', 'FAN20G0988' => 'fan', 'FAN20G1220' => 'fan', 'FAN21G3189' => 'fan', 'FAN24G2587' => 'fan', 'FAN25G3005' => 'fan', 'FAN27G2775' => 'fan', 'FAN27G3064' => 'fan', 'FAN28G1518' => 'fan', 'FAN28G2410' => 'fan', 'FvH4_1g15870' => 'fve', 'FvH4_2g26820' => 'fve', 'FvH4_2g27295' => 'fve', 'FvH4_2g41000' => 'fve', 'FvH4_3g00310' => 'fve', 'FvH4_6g28720' => 'fve', 'Glyma.04G061700' => 'gma', 'Glyma.04G061800' => 'gma', 'Glyma.06G062600' => 'gma', 'Glyma.06G062700' => 'gma', 'Glyma.06G062800' => 'gma', 'Glyma.07G023800' => 'gma', 'Glyma.07G268200' => 'gma', 'Glyma.08G217800' => 'gma', 'Glyma.08G217900' => 'gma', 'Glyma.09G014600' => 'gma', 'Glyma.12G138000' => 'gma', 'Glyma.13G080300' => 'gma', 'Glyma.13G081350' => 'gma', 'Glyma.14G149066' => 'gma', 'Glyma.15G120300' => 'gma', 'Glyma.17G005500' => 'gma', 'Gohir.A01G188800' => 'ghi', 'Gohir.A05G058600' => 'ghi', 'Gohir.A05G058700' => 'ghi', 'Gohir.A06G100800' => 'ghi', 'Gohir.A06G203800' => 'ghi', 'Gohir.A06G204001' => 'ghi', 'Gohir.A07G031600' => 'ghi', 'Gohir.A09G067800' => 'ghi', 'Gohir.D01G180700' => 'ghi', 'Gohir.D02G112600' => 'ghi', 'Gohir.D02G145900' => 'ghi', 'Gohir.D02G194150' => 'ghi', 'Gohir.D05G060700' => 'ghi', 'Gohir.D05G060800' => 'ghi', 'Gohir.D06G103000' => 'ghi', 'Gohir.D06G217750' => 'ghi', 'Gohir.D07G035400' => 'ghi', 'Gohir.D08G059050' => 'ghi', 'Gohir.D09G067600' => 'ghi', 'Gohir.D11G244901' => 'ghi', 'Gohir.D12G083701' => 'ghi', 'Gohir.D13G154733' => 'ghi', 'Gohir.D13G154766' => 'ghi', 'Gorai.001G037200' => 'gra', 'Gorai.002G221900' => 'gra', 'Gorai.005G127300' => 'gra', 'Gorai.005G163300' => 'gra', 'Gorai.005G217000' => 'gra', 'Gorai.006G082000' => 'gra', 'Gorai.007G260500' => 'gra', 'Gorai.008G093700' => 'gra', 'Gorai.009G061900' => 'gra', 'Gorai.009G062000' => 'gra', 'Gorai.010G118000' => 'gra', 'Gorai.010G248500' => 'gra', 'Gorai.012G031200' => 'gra', 'Gorai.013G174900' => 'gra', 'GSVIVG01001552001' => 'vvi', 'GSVIVG01002731001' => 'vvi', 'GSVIVG01002823001' => 'vvi', 'GSVIVG01002824001' => 'vvi', 'GSVIVG01004270001' => 'vvi', 'GSVIVG01007327001' => 'vvi', 'GSVIVG01008876001' => 'vvi', 'GSVIVG01023587001' => 'vvi', 'GSVIVG01034216001' => 'vvi', 'GSVIVG01035890001' => 'vvi', 'GSVIVG01038453001' => 'vvi', 'HanXRQChr01g0003561' => 'han', 'HanXRQChr02g0033841' => 'han', 'HanXRQChr02g0036961' => 'han', 'HanXRQChr02g0043901' => 'han', 'HanXRQChr03g0080231' => 'han', 'HanXRQChr03g0084891' => 'han', 'HanXRQChr03g0084901' => 'han', 'HanXRQChr04g0100071' => 'han', 'HanXRQChr08g0219841' => 'han', 'HanXRQChr08g0219861' => 'han', 'HanXRQChr09g0257771' => 'han', 'HanXRQChr09g0274471' => 'han', 'HanXRQChr10g0284571' => 'han', 'HanXRQChr10g0301571' => 'han', 'HanXRQChr11g0326001' => 'han', 'HanXRQChr13g0413351' => 'han', 'HanXRQChr13g0413361' => 'han', 'HanXRQChr16g0499661' => 'han', 'HanXRQChr16g0515741' => 'han', 'Haze_00450' => 'cav', 'Haze_00451' => 'cav', 'Haze_07020' => 'cav', 'Haze_16659' => 'cav', 'Haze_16660' => 'cav', 'Haze_16661' => 'cav', 'Haze_21428' => 'cav', 'Hma1.2p1_0059F.1_g032630' => 'hma', 'Hma1.2p1_0109F.1_g052490' => 'hma', 'Hma1.2p1_0135F.1_g061900' => 'hma', 'Hma1.2p1_0135F.1_g061910' => 'hma', 'Hma1.2p1_0164F.1_g073150' => 'hma', 'Hma1.2p1_1175F.1_g264040' => 'hma', 'HPP92_003147' => 'vpl', 'HPP92_003202' => 'vpl', 'HPP92_003205' => 'vpl', 'HPP92_019910' => 'vpl', 'HPP92_019911' => 'vpl', 'HPP92_020436' => 'vpl', 'Hund00438' => 'sun', 'Hund03457' => 'sun', 'Hund12573' => 'sun', 'Hund15197' => 'sun', 'Hund17289' => 'sun', 'Hund19353' => 'sun', 'Hund19590' => 'sun', 'Hund21131' => 'sun', 'Hund21133' => 'sun', 'Hund24591' => 'sun', 'Lalb_Chr04g0264431' => 'lal', 'Lalb_Chr07g0176931' => 'lal', 'Lalb_Chr10g0101751' => 'lal', 'Lalb_Chr11g0063521' => 'lal', 'Lalb_Chr14g0361791' => 'lal', 'Lalb_Chr15g0088251' => 'lal', 'Lalb_Chr15g0088261' => 'lal', 'Lalb_Chr18g0057331' => 'lal', 'Lalb_Chr18g0057341' => 'lal', 'Lalb_Chr18g0057351' => 'lal', 'Lalb_Chr20g0119541' => 'lal', 'Lalb_Chr22g0361371' => 'lal', 'Lalb_Chr23g0268251' => 'lal', 'Lalb_Chr24g0402031' => 'lal', 'Lalb_Chr25g0278901' => 'lal', 'Lj1g0004939' => 'lja', 'Lj1g0015636' => 'lja', 'Lj2A256T100' => 'lonja', 'Lj2C256T17' => 'lonja', 'Lj3g0003571' => 'lja', 'Lj3g0004040' => 'lja', 'Lj3g0024067' => 'lja', 'Lj4A624T16' => 'lonja', 'Lj4A624T17' => 'lonja', 'Lj4g0005227' => 'lja', 'Lj5g0020314' => 'lja', 'Lj6g0000834' => 'lja', 'Lj7A732T27' => 'lonja', 'Lj7P732T24' => 'lonja', 'Lj9C494G11' => 'lonja', 'Lj9C494T13' => 'lonja', 'LjContig00141g0011491' => 'lja', 'Lsat_1_v5_gn_1_130161' => 'lsa', 'Lsat_1_v5_gn_1_32161' => 'lsa', 'Lsat_1_v5_gn_3_113860' => 'lsa', 'Lsat_1_v5_gn_3_22060' => 'lsa', 'Lsat_1_v5_gn_4_134440' => 'lsa', 'Lsat_1_v5_gn_4_63920' => 'lsa', 'Lsat_1_v5_gn_4_84801' => 'lsa', 'Lsat_1_v5_gn_4_87100' => 'lsa', 'Lsat_1_v5_gn_6_77201' => 'lsa', 'Manes.03G010000' => 'mes', 'Manes.04G103300' => 'mes', 'Manes.08G068700' => 'mes', 'Manes.09G083700' => 'mes', 'Manes.11G065600' => 'mes', 'Manes.14G112328' => 'mes', 'Manes.16G128500' => 'mes', 'Manes.18G076700' => 'mes', 'Mapoly0004s0286' => 'mpo', 'Mapoly0045s0026' => 'mpo', 'MBI01_g02781_MAGBIO' => 'mbi', 'MBI08_g21669_MAGBIO' => 'mbi', 'MBI09_g12164_MAGBIO' => 'mbi', 'MBI11_g23732_MAGBIO' => 'mbi', 'MBI13_g09689_MAGBIO' => 'mbi', 'MBI14_g06669_MAGBIO' => 'mbi', 'MBI14_g06670_MAGBIO' => 'mbi', 'MBI14_g10147_MAGBIO' => 'mbi', 'MBI14_g28174_MAGBIO' => 'mbi', 'MBI15_g03489_MAGBIO' => 'mbi', 'MBI15_g07758_MAGBIO' => 'mbi', 'MBI15_g45095_MAGBIO' => 'mbi', 'MCO06G096' => 'mco', 'MCO08G352' => 'mco', 'MCO15G514' => 'mco', 'MD05G1361800' => 'mdo', 'MD08G1057600' => 'mdo', 'MD08G1163400' => 'mdo', 'MD08G1163500' => 'mdo', 'MD08G1163700' => 'mdo', 'MD08G1163900' => 'mdo', 'MD08G1164000' => 'mdo', 'MD10G1339300' => 'mdo', 'MD15G1038500' => 'mdo', 'MD15G1350300' => 'mdo', 'MD17G1222300' => 'mdo', 'Medtr1g014270' => 'mtr', 'Medtr1g014280' => 'mtr', 'Medtr1g014300' => 'mtr', 'Medtr1g037280' => 'mtr', 'Medtr2g027090' => 'mtr', 'Medtr3g106100' => 'mtr', 'Medtr4g006875' => 'mtr', 'Medtr4g030120' => 'mtr', 'Medtr4g030130' => 'mtr', 'Medtr4g134080' => 'mtr', 'MELO3C003355.2' => 'cme', 'MELO3C003356.2' => 'cme', 'MELO3C010481.2' => 'cme', 'MELO3C011294.2' => 'cme', 'MELO3C023464.2' => 'cme', 'MELO3C025570.2' => 'cme', 'Migut.A00001' => 'egut', 'Migut.B01036' => 'egut', 'Migut.C01134' => 'egut', 'Migut.D01106' => 'egut', 'Migut.D01108' => 'egut', 'Migut.D01116' => 'egut', 'Migut.D01117' => 'egut', 'Migut.D01118' => 'egut', 'Migut.D01119' => 'egut', 'Migut.D01121' => 'egut', 'Migut.H01632' => 'egut', 'Migut.I00597' => 'egut', 'Migut.I00600' => 'egut', 'Migut.I00601' => 'egut', 'Migut.I00606' => 'egut', 'Migut.I00697' => 'egut', 'Migut.I00698' => 'egut', 'Migut.M01445' => 'egut', 'MSTRG.11595' => 'ama', 'MSTRG.13105' => 'ama', 'MSTRG.1447' => 'ama', 'MSTRG.1468' => 'ama', 'MSTRG.16054' => 'ama', 'MSTRG.22796' => 'ama', 'MSTRG.26035' => 'ama', 'MSTRG.4684' => 'ama', 'MSTRG.9404' => 'ama', 'Nitab4.5_0000254g0210' => 'nta', 'Nitab4.5_0000373g0280' => 'nta', 'Nitab4.5_0000486g0120' => 'nta', 'Nitab4.5_0000633g0190' => 'nta', 'Nitab4.5_0001296g0110' => 'nta', 'Nitab4.5_0001454g0160' => 'nta', 'Nitab4.5_0001454g0170' => 'nta', 'Nitab4.5_0003976g0010' => 'nta', 'Nitab4.5_0004147g0010' => 'nta', 'Nitab4.5_0004147g0020' => 'nta', 'Nitab4.5_0004637g0080' => 'nta', 'Nitab4.5_0004882g0040' => 'nta', 'Nitab4.5_0007182g0020' => 'nta', 'Nitab4.5_0008698g0010' => 'nta', 'Nitab4.5_0011246g0010' => 'nta', 'Nn1g03168' => 'nnu', 'Nn1g07523' => 'nnu', 'Nn2g12328' => 'nnu', 'Nn3g20728' => 'nnu', 'Nn5g28268' => 'nnu', 'Nn5g28528' => 'nnu', 'Nn8g39837' => 'nnu', 'Oeu001426.1' => 'oeu', 'Oeu009794.1' => 'oeu', 'Oeu009796.1' => 'oeu', 'Oeu012645.2' => 'oeu', 'Oeu013501.1' => 'oeu', 'Oeu015496.1' => 'oeu', 'Oeu017294.2' => 'oeu', 'Oeu017296.2' => 'oeu', 'Oeu022765.1' => 'oeu', 'Oeu024812.1' => 'oeu', 'Oeu025354.1' => 'oeu', 'Oeu025966.1' => 'oeu', 'Oeu026706.1' => 'oeu', 'Oeu028335.1' => 'oeu', 'Oeu028501.1' => 'oeu', 'Oeu030921.1' => 'oeu', 'Oeu031078.1' => 'oeu', 'Oeu031079.1' => 'oeu', 'Oeu034784.1' => 'oeu', 'Oeu035350.1' => 'oeu', 'Oeu041255.1' => 'oeu', 'Oeu044433.1' => 'oeu', 'Oeu046885.1' => 'oeu', 'Oeu046886.1' => 'oeu', 'Oeu046887.1' => 'oeu', 'Oeu048247.1' => 'oeu', 'Oeu056785.1' => 'oeu', 'Oeu056786.1' => 'oeu', 'Oeu057018.1' => 'oeu', 'Oeu064488.2' => 'oeu', 'Os01g0869300' => 'osa', 'Os04g0320000' => 'osa', 'Os04g0326000' => 'osa', 'Os04g0501600' => 'osa', 'Os06g0286351' => 'osa', 'Peaxi162Scf00051g00732' => 'pax', 'Peaxi162Scf00207g00445' => 'pax', 'Peaxi162Scf00332g00430' => 'pax', 'Peaxi162Scf00332g00431' => 'pax', 'Peaxi162Scf00332g00432' => 'pax', 'Peaxi162Scf00430g00059' => 'pax', 'Peaxi162Scf00430g00515' => 'pax', 'Peaxi162Scf00468g00719' => 'pax', 'Peaxi162Scf00632g00022' => 'pax', 'Peaxi162Scf00827g00520' => 'pax', 'PGR031G0476' => 'pgr', 'PGR042G0600' => 'pgr', 'PGR042G1037' => 'pgr', 'PGR044G1288' => 'pgr', 'PGR044G2569' => 'pgr', 'PGSC0003DMG400017040' => 'stu', 'PGSC0003DMG400017041' => 'stu', 'PGSC0003DMG400017042' => 'stu', 'PGSC0003DMG400019827' => 'stu', 'PGSC0003DMG400019829' => 'stu', 'PGSC0003DMG401019826' => 'stu', 'PGSC0003DMG401028496' => 'stu', 'PGSC0003DMG402013303' => 'stu', 'PGSC0003DMG402028496' => 'stu', 'PGSC0003DMG402028522' => 'stu', 'Phvul.003G087100' => 'pvu', 'Phvul.004G085694' => 'pvu', 'Phvul.005G085400' => 'pvu', 'Phvul.006G138400' => 'pvu', 'Phvul.008G163350' => 'pvu', 'Phvul.009G087800' => 'pvu', 'Phvul.009G087900' => 'pvu', 'Phvul.009G088000' => 'pvu', 'Phvul.010G160600' => 'pvu', 'Potri.001G046500' => 'ptr', 'Potri.002G084300' => 'ptr', 'Potri.003G181300' => 'ptr', 'Potri.006G004750' => 'ptr', 'Potri.006G186700' => 'ptr', 'Potri.006G263300' => 'ptr', 'Potri.016G005400' => 'ptr', 'Potri.018G020400' => 'ptr', 'Potri.018G109600' => 'ptr', 'Pp3c10_24900' => 'ppa', 'Pp3c20_23000' => 'ppa', 'Pp3c23_10270' => 'ppa', 'PRCOL_00000456' => 'pco', 'Prupe.1G392500' => 'ppe', 'Prupe.1G499400' => 'ppe', 'Prupe.3G097300' => 'ppe', 'Prupe.4G003600' => 'ppe', 'Psat0s3521g0080' => 'psa', 'Psat0s3798g0160' => 'psa', 'Psat0s6006g0080' => 'psa', 'Psat1g172440' => 'psa', 'Psat2g118120' => 'psa', 'Psat5g043920' => 'psa', 'Psat6g027440' => 'psa', 'Psat6g058680' => 'psa', 'Psat6g099000' => 'psa', 'Psat7g158760' => 'psa', 'Psat7g158800' => 'psa', 'Psat7g259280' => 'psa', 'Psat7g259320' => 'psa', 'Psat7g259360' => 'psa', 'Psat7g259440' => 'psa', 'PSO063G5050' => 'pso', 'PSO170G2163' => 'pso', 'PSO210G1034' => 'pso', 'PSO339G4429' => 'pso', 'PSO384G0838' => 'pso', 'PSO528G0268' => 'pso', 'PSO782G1494' => 'pso', 'PSO782G1645' => 'pso', 'QL02p019527' => 'qlo', 'QL03p012098' => 'qlo', 'QL04p035257' => 'qlo', 'QL04p037144' => 'qlo', 'QL05p035479' => 'qlo', 'QL05p067756' => 'qlo', 'QL06p006672' => 'qlo', 'QL07p011770' => 'qlo', 'QL07p048642' => 'qlo', 'QL09p034959' => 'qlo', 'QL10p058180' => 'qlo', 'QL12p018079' => 'qlo', 'RcHm_v2.0_Chr2g0133121' => 'rch', 'RcHm_v2.0_Chr5g0000481' => 'rch', 'RcHm_v2.0_Chr6g0295681' => 'rch', 'RcHm_v2.0_Chr6g0299571' => 'rch', 'Rhsim02G0215600' => 'rsi', 'Rhsim02G0215700' => 'rsi', 'Rhsim06G0104100' => 'rsi', 'Rhsim06G0104300' => 'rsi', 'Rhsim07G0164400' => 'rsi', 'Rhsim08G0206600' => 'rsi', 'Rhsim08G0207000' => 'rsi', 'Rhsim13G0140500' => 'rsi', 'Sabra01G0031900' => 'sbr', 'Sabra02G0065900' => 'sbr', 'Sabra03G0132700' => 'sbr', 'Sabra06G0004000' => 'sbr', 'Sabra06G0205500' => 'sbr', 'Sabra16G0010300' => 'sbr', 'Sabra18G0022900' => 'sbr', 'SalBow1G3972' => 'sbo', 'SalBow4G0223' => 'sbo', 'SalBow7G0338' => 'sbo', 'SalBow7G0970' => 'sbo', 'SalBow7G4584' => 'sbo', 'SalBow8G2355' => 'sbo', 'Sc02g0006040' => 'sci', 'Sc05g0008580' => 'sci', 'Sc09g0010540' => 'sci', 'Sc09g0010550' => 'sci', 'Sc12g0008390' => 'sci', 'Sc17g0008000' => 'sci', 'Sc20g0003420' => 'sci', 'Sc21g0003590' => 'sci', 'Sc23g0006420' => 'sci', 'Sed0006597' => 'sed', 'Sed0013932' => 'sed', 'Sed0016925' => 'sed', 'Sed0023061' => 'sed', 'Sed0023696' => 'sed', 'SEGI_00154' => 'sgi', 'SEGI_00475' => 'sgi', 'SEGI_00765' => 'sgi', 'SEGI_00794' => 'sgi', 'SEGI_01166' => 'sgi', 'SEGI_03065' => 'sgi', 'SEGI_03170' => 'sgi', 'SEGI_03795' => 'sgi', 'SEGI_03935' => 'sgi', 'SEGI_04299' => 'sgi', 'SEGI_04939' => 'sgi', 'SEGI_05844' => 'sgi', 'SEGI_05850' => 'sgi', 'SEGI_08152' => 'sgi', 'SEGI_08407' => 'sgi', 'SEGI_08445' => 'sgi', 'SEGI_10232' => 'sgi', 'SEGI_10314' => 'sgi', 'SEGI_10784' => 'sgi', 'SEGI_11107' => 'sgi', 'SEGI_11133' => 'sgi', 'SEGI_11549' => 'sgi', 'SEGI_11827' => 'sgi', 'SEGI_11840' => 'sgi', 'SEGI_12048' => 'sgi', 'SEGI_12693' => 'sgi', 'SEGI_12759' => 'sgi', 'SEGI_12793' => 'sgi', 'SEGI_13160' => 'sgi', 'SEGI_13438' => 'sgi', 'SEGI_14130' => 'sgi', 'SEGI_14497' => 'sgi', 'SEGI_14642' => 'sgi', 'SEGI_15025' => 'sgi', 'SEGI_16249' => 'sgi', 'SEGI_17461' => 'sgi', 'SEGI_17575' => 'sgi', 'SEGI_17662' => 'sgi', 'SEGI_17720' => 'sgi', 'SEGI_17736' => 'sgi', 'SEGI_17811' => 'sgi', 'SEGI_17824' => 'sgi', 'SEGI_18039' => 'sgi', 'SEGI_18998' => 'sgi', 'SEGI_21026' => 'sgi', 'SEGI_21908' => 'sgi', 'SEGI_24053' => 'sgi', 'SEGI_24229' => 'sgi', 'SEGI_25469' => 'sgi', 'SEGI_25840' => 'sgi', 'SEGI_25885' => 'sgi', 'SEGI_26816' => 'sgi', 'SEGI_27079' => 'sgi', 'SEGI_27687' => 'sgi', 'SEGI_27884' => 'sgi', 'SEGI_28918' => 'sgi', 'SEGI_29373' => 'sgi', 'SEGI_29820' => 'sgi', 'SEGI_30859' => 'sgi', 'SEGI_31316' => 'sgi', 'SEGI_31488' => 'sgi', 'SEGI_31817' => 'sgi', 'SEGI_31942' => 'sgi', 'SEGI_32324' => 'sgi', 'SEGI_32774' => 'sgi', 'SEGI_34016' => 'sgi', 'SEGI_34094' => 'sgi', 'SEGI_35096' => 'sgi', 'SEGI_35916' => 'sgi', 'SEGI_36953' => 'sgi', 'SEGI_37245' => 'sgi', 'SEGI_37901' => 'sgi', 'SEGI_38414' => 'sgi', 'SEGI_39622' => 'sgi', 'SEGI_39939' => 'sgi', 'SEGI_40495' => 'sgi', 'SEGI_40897' => 'sgi', 'SGA_v2.0_scaffold157G37399' => 'sas', 'SGA_v2.0_scaffold20G09079' => 'sas', 'SGA_v2.0_scaffold239G43974' => 'sas', 'SGA_v2.0_scaffold49G18219' => 'sas', 'SGA_v2.0_scaffold52G18968' => 'sas', 'SGA_v2.0_scaffold5G02780' => 'sas', 'SGA_v2.0_scaffold64G22020' => 'sas', 'SGA_v2.0_scaffold7G03693' => 'sas', 'SHI14958' => 'shi', 'SHI21056' => 'shi', 'SHI21057' => 'shi', 'SHI21058' => 'shi', 'SHI28254' => 'shi', 'SHI55104' => 'shi', 'SMO228G0140' => 'smo', 'Solyc02g086630.3' => 'sly', 'Solyc02g092850.2' => 'sly', 'Solyc03g116920.3' => 'sly', 'Solyc03g116930.3' => 'sly', 'Solyc03g116940.3' => 'sly', 'Solyc03g116970.3' => 'sly', 'Solyc03g117010.4' => 'sly', 'Solyc06g060380.3' => 'sly', 'Solyc06g065710.3' => 'sly', 'Solyc06g068055.1' => 'sly', 'Solyc06g068430.4' => 'sly', 'Solyc07g020910.2' => 'sly', 'Solyc11g012770.2' => 'sly', 'Sopen02g031380' => 'spe', 'Sopen02g037420' => 'spe', 'Sopen03g035850' => 'spe', 'Sopen03g035860' => 'spe', 'Sopen03g035870' => 'spe', 'Sopen03g035880' => 'spe', 'Sopen03g035910' => 'spe', 'Sopen06g020520' => 'spe', 'Sopen06g024230' => 'spe', 'Sopen06g025340' => 'spe', 'Sopen06g025700' => 'spe', 'Sopen07g009040' => 'spe', 'Sopen11g007510' => 'spe', 'Sp1g14250' => 'spa', 'Sp2g12400' => 'spa', 'Sp5g22150' => 'spa', 'Sp5g32750' => 'spa', 'Sp5g34950' => 'spa', 'Sp6g32540' => 'spa', 'Sp7g29700' => 'spa', 'TAR362G0083' => 'tar', 'TAR365G1219' => 'tar', 'TAR381G0759' => 'tar', 'TAR383G0653' => 'tar', 'TAR383G0993' => 'tar', 'TAR410G0002' => 'tar', 'TAR410G0003' => 'tar', 'TAR622G0214' => 'tar', 'TAR622G0308' => 'tar', 'TAR622G0360' => 'tar', 'TAR622G1051' => 'tar', 'TAR622G1346' => 'tar', 'TAR622G1443' => 'tar', 'TAR624G0718' => 'tar', 'TAR625G0860' => 'tar', 'TAR626G1146' => 'tar', 'TAR628G0446' => 'tar', 'TAR628G1710' => 'tar', 'TAR629G0616' => 'tar', 'TAR636G1427' => 'tar', 'THA.LOC104799680' => 'tha', 'THA.LOC104803856' => 'tha', 'THA.LOC104806739' => 'tha', 'THA.LOC104812429' => 'tha', 'THA.LOC104812796' => 'tha', 'THA.LOC104814994' => 'tha', 'THA.LOC104822541' => 'tha', 'Thecc.06G040400' => 'tca', 'Thecc.06G241200' => 'tca', 'Thecc.08G124600' => 'tca', 'Thecc.09G016900' => 'tca', 'Thhalv10000739m.g' => 'esa', 'Thhalv10006733m.g' => 'esa', 'Thhalv10018009m.g' => 'esa', 'Thhalv10018162m.g' => 'esa', 'Thhalv10024366m.g' => 'esa', 'TPR.G17534' => 'tpr', 'TPR.G20' => 'tpr', 'TPR.G25501' => 'tpr', 'TPR.G25834' => 'tpr', 'TPR.G31984' => 'tpr', 'TPR.G38768' => 'tpr', 'TPR.G38846' => 'tpr', 'TPR.G38929' => 'tpr', 'TPR.G3974' => 'tpr', 'TPR.G5976' => 'tpr', 'TPR.G6661' => 'tpr', 'TPR.G8250' => 'tpr', 'TWI12G0853' => 'twi', 'TWI18G1012' => 'twi', 'TWI18G1124' => 'twi', 'TWI18G1175' => 'twi', 'TWI32G0001' => 'twi', 'TWI34G0075' => 'twi', 'TWI38G2314' => 'twi', 'TWI53G0810' => 'twi', 'TWI56G0829' => 'twi', 'TWI63G0122' => 'twi', 'TWI63G1562' => 'twi', 'unitig_21.g20239' => 'ugi', 'unitig_26.g9404' => 'ugi', 'unitig_32.g10892' => 'ugi', 'unitig_52.g17024' => 'ugi', 'unitig_748.g8261' => 'ugi', 'vmacro03607' => 'vma', 'vmacro05129' => 'vma', 'vmacro10797' => 'vma', 'vmacro11258' => 'vma', 'vmacro19048' => 'vma', 'VMungo0331G1930' => 'vmu', 'VMungo0540G1053' => 'vmu', 'VMungo0540G1416' => 'vmu', 'VMungo0647G1307' => 'vmu', 'VMungo0647G1974' => 'vmu', 'VMungo0647G2515' => 'vmu', 'VMungo0966G0001' => 'vmu', 'VMungo1215G2808' => 'vmu', 'VMungo1309G2547' => 'vmu', 'VMungo1309G2935' => 'vmu', 'Zm00001eb078170' => 'zma', 'Zm00001eb146530' => 'zma', 'Zm00001eb146550' => 'zma', 'Zm00001eb184560' => 'zma', 'Zm00001eb203440' => 'zma', 'Zm00001eb213590' => 'zma', 'Zm00001eb226200' => 'zma', 'Zm00001eb246990' => 'zma', 'Zm00001eb280900' => 'zma', 'Zm00001eb380840' => 'zma', 'Zm00001eb422240' => 'zma', 'Zm00001eb425970' => 'zma' ) $gf_id = 'HOM05D000555' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000555' ) $data_identifier = 'HOM05D000555' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 20, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 13, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 16, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 19, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 15, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 7, 'oeu' => (int) 30, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 5, 'sgi' => (int) 77, 'sas' => (int) 8, 'shi' => (int) 6, 'smo' => (int) 1, 'sly' => (int) 13, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 20, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425970' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1